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Last update on 01. Oct 2024 .
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Rename taxonomic groups

OCCURRENCE  

ARB_NT/Tree/Search groups/Rename...

 

DESCRIPTION  

Allows to rename

  • the currently selected group or
  • all listed groups in one go.

The input field at 'Selected group name' shows the name of the currently selected group.

If you modify that field, the group will be renamed.

The input field at 'Modify using ACI/SRT' allows scripted modification of group names:

  • for the currently selected group, the result (of applying that script to the groups name) will always be displayed behind 'Resulting group name' (if an error occurs, it will show there as well).
  • if you are satisfied with the result, press 'Apply to selected group' to actually change the groups name.
  • pressing 'Apply to all listed groups' will perform a batch rename for all listed groups.

 

NOTES  

None

 

EXAMPLES  

Example ACI/SRT expressions:

Tag/untag groups by adding/removing prefixes: 
"[TAG] ";dd              will prefix the group-name with "[TAG] " (using ´ARB Command Interpreter (ACI)´)
:[TAG]=                  will remove that prefix again            (using ´Search and Replace Tool (SRT)´)
/^\[TAG\]//              dito                                     (using ´Regular Expressions (REG)´)
/\[.*\]//                remove multiple tag-prefixes
 

Special ACI-commands (only valid in group rename!)  

hitidx

returns the index of the current group (as listed in group-search hitlist). The index runs from 1 to N (with N=number of hits).

hitcount

returns the overall number of hits (as listed in hitlist).

dupidx

returns the index of the current group (inside the cluster of all listed duplicates of the current group). The index runs from 1 to N (with N=number of duplicates of the current group). The order of the indices is affected by the sort order of the hit list.
Hint: the cluster numbers are displayed when you sort the results 'by cluster'.

groupsize

returns the size of the group.

markedingroup

returns the number of marked species in the group.

nesting

returns the nesting level of the group (=number of parent groups).

aid

returns the AID (=average ingroup distance) of the group (see ´Search taxonomic groups´ for details).
 

WARNINGS  

None

 

BUGS  

No bugs known