Further parameters the user has to specify:
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select how big the combination should be
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select if the complement should be checked, too
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select the minimum mismatch that unmarked species should have in the combination
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for weighting mismatches there are three possibilities:
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all mismatches are weighted equally
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mismatches are weighted depending on which kind of mismatch occurred
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mismatches are weighted stronger the nearer it occurs at the center of the probe
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maximum non-group hits which are allowed for the calculation
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last but not least the pt_server has to be chosen. Remember to use an up to date server!
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