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Last update on 25. Nov 2018 .
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Create SAI from protein secondary structure

OCCURRENCE

ARB_NT/SAI/Create SAI using/Protein secondary structure

 

DESCRIPTION

Takes the currently ´Selected species´ and searches for the field 'sec_struct'. A new SAI is created using the data in this field. A simple input window pops up where the default name '[species name]_pfold' for the new SAI can be changed.

 

NOTES

The import filter 'dssp_all.ift' allows for importing the amino acid sequence as well as the protein secondary structure from a dssp file and the structure is stored in the field 'sec_struct'. That way, secondary structure can be aligned along with the sequence manually and can later be extracted to create an SAI.

The import filter 'dssp_2nd_struct.ift' extracts only the protein secondary structure which is stored as alignment data. SAIs can simply be created from these species using ´Convert Species to SAI´.

Refer to ´Import Foreign Data(bases)´ and especially ´NOTES: dssp´ for detailed information on importing sequences and structures and on the DSSP format.

 

EXAMPLES

None

 

WARNINGS

None

 

BUGS

No bugs known