More docs on the
ARB website
.
See also
index
of helppages.
Last update on 04. Mar 2022 .
Main topics:
ARB: a Short Introduction
Glossary
Related topics:
ARB environment variables
Start a console
OCCURRENCE
DESCRIPTION
NOTES
EXAMPLES
WARNINGS
BUGS
OCCURRENCE
ARB_NT/Tools/Start XTERM
DESCRIPTION
Starts a console window from ARB.
The shell in the console uses the same environment as the running arb session. From this environment you may call perl-scripts
delivered with ARB (e.g. in $ARBHOME/PERL_SCRIPTS) or
your own scripts.
The main reason for the execution environment is the ability to easily access the database currently loaded into ARB.
NOTES
The console window is started in the same way as done to call external tools (like RAxML).
See ARB_XTERM in
´ARB environment variables´
to customize the way arb starts consoles.
EXAMPLES
of existing scripts:
listMarkedSpecies.pl (save names of currently marked species to a textfile)
markSpecies.pl (mark species according to content of a textfile)
arb_read_tree (import tree from newick treefile)
WARNINGS
None
BUGS
No bugs known