Different base pairs in helix regions can be indicated by user-definable symbols. This window allows you to change the mapping between base pairs and displayed symbols.
Configuration
Show helix: Toggle display of helix symbols
Pair definitions. Each line contains two textfields:
The right textfield contains one or more base-pairs. Each base pair contains two characters (bases, gaps-characters, ...). Base-pairs are separated by spaces (' ').
The left textfield contains the helix symbol used for each of the specified pairs.
NOTES
Pairs are not case-sensitive
If a pair is not defined in any line, the symbol given behind 'Default' is used.
EXAMPLES
None
WARNINGS
The symbols defined here will also be displayed in SECEDIT. You may define translation rules for these symbols in ´SECEDIT bond definitions´.