Here you can change various options:
Toggle display of bases
Distance between strands
Sets the distance between opposite helix strands (default=1)
Display bonds + Bond thickness
Select whether/how to display bonds. You can choose to display bonds for non-helical parts in the middle of a helix region by selecting '+Non-helix'. Click the 'DEFINE' button to specify bond-types and their layout (see ´SECEDIT bond definitions´
). 'Bond thickness' defines the linewidth used to draw bonds.
Defines whether/how the current cursor position is annotated. If annotated, a small box containing a position number gets displayed.
None (=do not annotate cursor)
Absolute (=annotate with absolute alignment position)
Ecoli (=annotate with Ecoli-relative position)
Base (=annotate with base-number)
If checked, each helix is annotated with its helix-number (as defined in SAI "HELIX_NR"; see ´Helix´
Annotate ecoli positions
If checked, every 100th ecoli position is annotated.
Show all positions ...
Any position where the sequence of the currently ´Selected species´
has bases will always be displayed unconditionally. You can choose to additionally display
Binding helix positions
Ecoli base positions
Display Structure Skeleton + Skeleton thickness
Draw a skeleton of the secondary structure with variable line thickness.