Here you can change various options:
Display bases
Toggle display of bases
Distance between strands
Sets the distance between opposite helix strands (default=1)
Display bonds + Bond thickness
Select whether/how to display bonds. You can choose to display bonds for non-helical parts in the middle of a helix region by selecting '+Non-helix'. Click the 'DEFINE' button to specify bond-types and their layout (see
´SECEDIT bond definitions´). 'Bond thickness' defines the linewidth used to draw bonds.
Annotate cursor
Defines whether/how the current cursor position is annotated. If annotated, a small box containing a position number gets displayed.
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None (=do not annotate cursor)
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Absolute (=annotate with absolute alignment position)
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Ecoli (=annotate with Ecoli-relative position)
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Base (=annotate with base-number)
Annotate helices
If checked, each helix is annotated with its helix-number (as defined in SAI "HELIX_NR"; see
´Helix´).
Annotate ecoli positions
If checked, every 100th ecoli position is annotated.
Show all positions ...
Any position where the sequence of the currently
´Selected species´ has bases will always be displayed unconditionally. You can choose to additionally display
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Binding helix positions
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Ecoli base positions
Display Structure Skeleton + Skeleton thickness
Draw a skeleton of the secondary structure with variable line thickness.