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Last update on 25. Nov 2018 .
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Compare tree topologies

OCCURRENCE

ARB_NT/Tree/Compare topology

 

DESCRIPTION

Compares the topologies of the source and the destination tree.

For each subtree of the destination tree, the best matching subtree in the source tree is searched.

If any source subtree contains the same set of species (while disregarding the subtree topology itself), the destination subtree parent branch will not get any annotation.

Otherwise the number of differences (i.e. the number of missing plus additional species) to the best matching source subtree is written to the destination subtree parent branch.

 

NOTES

To remove the generated annotations use ´Remove bootstrap values´.

 

RELATED

To compare taxonomies use ´Compare taxonomy´.

 

WARNINGS

Calling this function will delete existing bootstrap values from the destination tree.

 

BUGS

far too slow :-(