More docs on the
ARB website
.
See also
index
of helppages.
Last update on 30. Nov 2022 .
Main topics:
ARB: a Short Introduction
Glossary
What are Species?
Related topics:
E. coli Reference
SAI Administration
Modify SAI range
SAI calculator
Visualize SAIs in editors.
Visualize SAIs at probe match targets.
Convert Species to SAI
Helix
Consensus
Accessibility SAIs
SAI (Sequence associated information)
DESCRIPTION
Edit SAIs
Visualize SAIs
IMPLEMENTED SAIs
Additional information about SAI
DESCRIPTION
The main database divides all sequences into two groups:
sequences of species -> stored in alignments of species
all other sequences (masks, filters, profiles) -> stored in alignments of SAIs
You should keep the number of SAIs limited for you cannot search SAIs.
Edit SAIs
´SAI Administration´
´Modify SAI range´
´SAI calculator´
Visualize SAIs
´Visualize SAIs in editors.´
´Visualize SAIs at probe match targets.´
IMPLEMENTED SAIs
ECOLI
A copy of the E.coli sequence (see
´E. coli Reference´
).
It is used to convert the absolute alignment position into an E.coli-based position and vice versa.
Note:
you may use any other sequence instead of ECOLI.
the name displayed in ARB_EDIT4 can be modified under Properties/NDS
see
´Convert Species to SAI´
for how to generate.
HELIX_NR
Helix Numbering
HELIX
and Helix template (see
´Helix´
)
CONSENSUS
custom consensus sequence (see
´Consensus´
)
Additional information about SAI
´Accessibility SAIs´