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Last update on 12. Oct 2021 .
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SAI (Sequence associated information)

DESCRIPTION  

The main database divides all sequences into two groups:

  1. sequences of species -> stored in alignments of species
  2. all other sequences (masks, filters, profiles) -> stored in alignments of SAIs

You should keep the number of SAIs limited for you cannot search SAIs.

 

Edit SAIs  


 

Visualize SAIs  


 

IMPLEMENTED SAIs  

ECOLI

A copy of the E.coli sequence (see ´E. coli Reference´).
It is used to convert the absolute alignment position into an E.coli-based position and vice versa.
Note:
  • you may use any other sequence instead of ECOLI.
  • the name displayed in ARB_EDIT4 can be modified under Properties/NDS
  • see ´Convert Species to SAI´ for how to generate.

HELIX_NR

Helix Numbering

HELIX

and Helix template (see ´Helix´)

CONSENSUS

custom consensus sequence (see ´Consensus´)
 

Additional information about SAI